Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015837066.1_cds_XP_016506523.1_19742
CDS Infomation

[gene=LOC107824288] [db_xref=GeneID:107824288] [protein=endoribonuclease Dicer homolog 1-like] [protein_id=XP_016506523.1] [location=join(50928..51177,51299..51480,51857..52003,52190..52682,52798..52979,53689..53835,54048..54347)] [gbkey=CDS]
Sequence

ATGGAAAATCCAAAACAAGAGGAAAACCTTGTCTCTCTTTATACTTCATCATCAGAAAAC
CTTCATTTAACAGAAGAAATGAACCAAATTACACAGAATAATGAAACTCATATAGTTTTG
GAGAGGTCAGTGGAGGAAGTAGAGAAAATAATAGCATACAAATTCAAGAACCCTAATTTG
TTAGAACGAGCTTTTACTCATTCTTCCTTTGAAGAAAACTGTGCTTCGTATGAGAGATTG
GAGTTTATGGGTGATGCTGCTCTTAATCTGTTGATAGCAACGGAGCATTTTTTGAATTAC
CCTGATTTACCTCCTGGGAAACTCACAAGGTTGAGAGCTACCAATGTAGATACAGAGAAA
CTTGCTAGAGTTGCCATCAAATATAATTTGCATGATTATTTACGTCACAATAAACCTTTA
CTTAAAGGACAAGTGGAAGAATTCAGAGATGCAATAATGGAGTACCCATTGCATTCAACA
GGTCTCGTTGATGCCCCTAAAGTTCTTGCAGATATAGTTGAATCTTTGATTGGTGCCATC
TATATTGATGGCAATTTCTCCATGAATATAATTTGGCAGGTGGTAAAAAATTTGTTGCAG
CCTCTAATTACTCCAGAAAAACTCGAAATTCATCCAGTTACAAAAATTATCGAGTTATGC
CAAAAGAATGGATTGAAAGTAAAATTTGTTGATTCATGGGAGGAAACAGGAGAGGTTGAA
GTTCATGTTGATGGCAAACTTGTTGGAAAGGGGAAGTTTAATGGAAAGAAATTAGTTGCA
ATAAATAGGGCTGCACACAATGGTTATCTTCAAGTTGTCAAAAATTTGAGTGTGAAAAAA
ACTACTCATGATTACCCTTGTGATGAAAACCTTGTCTCTCTTTATACTTCATCATCAGAA
ATGAACCAAATTACACTAAATGATGAAACTCATATTGTTCCAGAGAGGTCAGTGGAGGAA
GTAGAGAAAATAATAGCATACAAATTCAAGAACCCTAATTTGTTACAACAAGCTTTTACT
CATTCTTCCTTTGAAGAAAACTGTGCATCATATGAGAGATTGGAGTATGTAGGTGATGCT
GTTCTCAATCTACTGATAGCAACGGCGCATTATTTGGATTACCCTGATTTACCTCCTGGG
AAACTCACAAGGTTGAGAGCTGCCAATGTGGATACTGAGAAACTTGCTAGAGTTGCAATT
AAATATAATTTGCATGATTATTTACGTCACAAAAAGCCTTTACTTAAAGGACAAGTGGAA
GGATTCAGAAATGCAATAATGGAGTACCCATTGCATTCAACAGGTCTCATTGATCCCCCT
AAAGTTCTTGCAGATATAGTTGAATCTTTGATTGGTGCAATCTATATTGATTGCAATTTC
TCCATGGATACAACTTGGAAGGTGGTAAAAAATTTCTTGCGGCCTCTAATTACTCTAGAA
AAACTCGAGATTCATCCCGTTACGAAAATTAACGAGTTATGCCAAAAGAATGGATTGAAA
GTTGAATTTGTTGATTCATGGGGGGAAACAGGAGAGGTTGAAGTTCATGTTAATGGCAAA
ATTGTTGGAAAGGGGAAGTTTAGTGGAAAGAAAATAATTGCACAAAATAGGGCTGCACAC
AATGCTTATTACCAAGTTGTTACAAATTTGAGTAAGGAAAAAACTACTGATGATTACCCT
TGTGATGAAACACAAAGCTGA

Peptide Sequence

PEP ID

XP_016506523.1
PEP Infomation

PREDICTED: endoribonuclease Dicer homolog 1-like [Nicotiana tabacum]
Sequence

MENPKQEENLVSLYTSSSENLHLTEEMNQITQNNETHIVLERSVEEVEKIIAYKFKNPNL
LERAFTHSSFEENCASYERLEFMGDAALNLLIATEHFLNYPDLPPGKLTRLRATNVDTEK
LARVAIKYNLHDYLRHNKPLLKGQVEEFRDAIMEYPLHSTGLVDAPKVLADIVESLIGAI
YIDGNFSMNIIWQVVKNLLQPLITPEKLEIHPVTKIIELCQKNGLKVKFVDSWEETGEVE
VHVDGKLVGKGKFNGKKLVAINRAAHNGYLQVVKNLSVKKTTHDYPCDENLVSLYTSSSE
MNQITLNDETHIVPERSVEEVEKIIAYKFKNPNLLQQAFTHSSFEENCASYERLEYVGDA
VLNLLIATAHYLDYPDLPPGKLTRLRAANVDTEKLARVAIKYNLHDYLRHKKPLLKGQVE
GFRNAIMEYPLHSTGLIDPPKVLADIVESLIGAIYIDCNFSMDTTWKVVKNFLRPLITLE
KLEIHPVTKINELCQKNGLKVEFVDSWGETGEVEVHVNGKIVGKGKFSGKKIIAQNRAAH
NAYYQVVTNLSKEKTTDDYPCDETQS

Transcript Sequence

Gene sequence data has not been registered.